What we do
... is write our own
software for analyzing assorted data from protein bioinformatics
and computational biology of proteins. Occasionaly we do MD simulations.
We are a closet
game developers too.
Servers & Code
Mostly functional
-
deconSTRUCT
is a server for fast searching through PDB
(and some of its subsets) using a piece of structure as a query - among other things,
the superimposed structures are downloadable as Pymol, Chimera and Yasara sessions.
-
Cube-DB is a database of pre-calculated results
(including visualizations and modifiable spreadsheets) for finding sub-family specific residues. Useful when planning
an experiment targeted at detecting regions of a protein responsible for a function that is unique among
similar proteins expressed in the same organism.
Under development
-
Cube finds sub-family specific residues for the
user-specified or user-uploaded families of paralogous proteins.
-
OrthoBalancer for a given set of paralogous proteins
from one species,
creates non-overlapping sets of orthologous sequences from other species and taxonomical groups.