evolution of protein structure and function [EPSF]

Code


struct(tarball). Protein structure comparison and db search.
    Reduced representation of protein structure: implications on efficiency and scope of detection of structural similarity. (paper)


hypercube(tarball). Conservation and specialization scoring code used in:
    Determinants, Discriminants, Conserved Residues (paper)
    Cube_DB (database of pre-calculated results)
    Cube (server)
    a sort-of tutorial can be found here

specs (on github). Generic conservation and its mapping on protein structure and reference sequence; generation of xls and pymol session visualizations.

SuperExonRetriver2000 (on github). Super complicated bioinformatic file juggling and management system, developed by Ana Bulovic, FER, University of Zagreb, during her Spring 2012 internship in BII.